Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
BDW_08065ABC transporter, substrate binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (563 aa)    
Predicted Functional Partners:
BDW_08070
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
BDW_08075
ABC transporter, membrane spanning protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
BDW_08055
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.993
BDW_08060
Oligopeptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.993
BDW_01350
Oligopeptide ABC transporter ATP-binding protein; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.978
BDW_01345
Peptide ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.976
BDW_09775
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.947
BDW_09770
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.935
BDW_01275
COG4239 ABC-type uncharacterized transport system, permease component.
 
  
 0.726
BDW_07560
COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.725
Your Current Organism:
Bdellovibrio bacteriovorus W
NCBI taxonomy Id: 765869
Other names: B. bacteriovorus W
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