STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDW_08065ABC transporter, substrate binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (563 aa)    
Predicted Functional Partners:
BDW_08070
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
BDW_08075
ABC transporter, membrane spanning protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.997
BDW_08055
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.993
BDW_01415
ABC-2 type transporter; COG0842 ABC-type multidrug transport system, permease component.
     
 0.953
BDW_08060
Oligopeptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.943
BDW_09775
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.934
BDW_09770
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.896
BDW_08650
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
     
 0.856
BDW_01270
Peptide ABC transporter, permease protein; COG4174 ABC-type uncharacterized transport system, permease component.
 
  
 0.836
BDW_07560
COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.829
Your Current Organism:
Bdellovibrio bacteriovorus W
NCBI taxonomy Id: 765869
Other names: B. bacteriovorus W
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.