STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDW_09080Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (296 aa)    
Predicted Functional Partners:
BDW_09090
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.970
mrdB
Rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.962
BDW_00750
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
 
 0.956
BDW_06175
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
 
 0.948
BDW_00775
COG2003 DNA repair proteins.
 
  
 0.827
BDW_09085
Hypothetical protein.
       0.826
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
  
 0.668
BDW_13870
Hypothetical protein; COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.
  
 
 0.634
BDW_01635
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.629
BDW_09100
COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
     0.629
Your Current Organism:
Bdellovibrio bacteriovorus W
NCBI taxonomy Id: 765869
Other names: B. bacteriovorus W
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.