STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF02582.1Type I secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
AHF02583.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.953
AHF03334.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
AHF05237.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.766
AHF05337.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.585
AHF04284.1
Hemolysin-type calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.585
AHF02585.1
Na-ca exchanger/integrin-beta4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.554
AHF02584.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.552
AHF03037.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.529
AHF03038.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.529
AHF03537.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.423
Your Current Organism:
Marichromatium purpuratum
NCBI taxonomy Id: 765910
Other names: M. purpuratum 984, Marichromatium purpuratum 984, Marichromatium purpuratum str. 984, Marichromatium purpuratum strain 984
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.