Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF05337.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1148 aa)    
Predicted Functional Partners:
AHF03144.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.754
AHF04065.1
1-acyl-sn-glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.683
AHF04283.1
Microcystin dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.665
AHF05510.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.655
AHF02489.1
TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.640
AHF02959.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.640
AHF04596.1
TonB-denpendent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.640
AHF04806.1
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.638
AHF05484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.598
AHF02583.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.584
Your Current Organism:
Marichromatium purpuratum
NCBI taxonomy Id: 765910
Other names: M. purpuratum 984, Marichromatium purpuratum 984, Marichromatium purpuratum str. 984, Marichromatium purpuratum strain 984
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