Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AHF02845.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)    
Predicted Functional Partners:
AHF03510.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.900
AHF02824.1
PAS sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
   0.876
AHF02486.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.802
AHF04330.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.782
AHF03032.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.781
AHF05038.1
Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.768
AHF04258.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.758
AHF02893.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.704
AHF02923.1
Ammonium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
   0.695
AHF04612.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.662
Your Current Organism:
Marichromatium purpuratum
NCBI taxonomy Id: 765910
Other names: M. purpuratum 984, Marichromatium purpuratum 984, Marichromatium purpuratum str. 984, Marichromatium purpuratum strain 984
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