Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHF03236.1Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)    
Predicted Functional Partners:
AHF03235.1
Crp/Fnr family transcription regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHF03237.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AHF05382.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
     
 0.564
AHF03234.1
Major pilin protein fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.536
AHF04549.1
Ribosomal large subunit pseudouridine synthase E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family.
      0.535
AHF04456.1
Paraquat-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AHF03233.1
Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.
       0.502
AHF05044.1
Ryanodine receptor Ryr; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
AHF03355.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.487
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
       0.463
Your Current Organism:
Marichromatium purpuratum
NCBI taxonomy Id: 765910
Other names: M. purpuratum 984, Marichromatium purpuratum 984, Marichromatium purpuratum str. 984, Marichromatium purpuratum strain 984
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