STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF05079.1Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)    
Predicted Functional Partners:
AHF05080.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.853
AHF05077.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.831
AHF05078.1
Carboxysome shell protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.831
dnaA
Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
      
 0.766
tatA
Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
      
 0.765
AHF05076.1
Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.760
rbcL-2
Ribulose bisophosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
     
 0.676
AHF05075.1
Carbon dioxide-concentrating protein CcmK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.670
AHF05081.1
Ribulose bisphosphate carboxylase small chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.613
AHF05073.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
Your Current Organism:
Marichromatium purpuratum
NCBI taxonomy Id: 765910
Other names: M. purpuratum 984, Marichromatium purpuratum 984, Marichromatium purpuratum str. 984, Marichromatium purpuratum strain 984
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.