STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL73387.1DNA-binding protein with winged-HTH domain; PFAM: Transcriptional regulatory protein, C terminal. (802 aa)    
Predicted Functional Partners:
AFL72727.1
PAS domain S-box; PFAM: Response regulator receiver domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
  
  
 0.635
AFL73327.1
PAS domain S-box; PFAM: EAL domain; GAF domain; Response regulator receiver domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
  
  
 0.544
AFL73801.1
PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
   
 
 0.533
AFL73388.1
Putative signal transduction protein; PFAM: HDOD domain.
       0.525
AFL73389.1
Hypothetical protein.
       0.525
AFL75057.1
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; PFAM: domain; 4Fe-4S binding domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
 
   0.517
AFL73390.1
PFAM: Transposase DDE domain; Transposase.
       0.508
AFL74598.1
Putative glycosyltransferase; PFAM: Methyltransferase domain; Glycosyl transferase family 2.
  
  
 0.503
AFL73121.1
EAL domain-containing protein; PFAM: EAL domain; FHA domain.
  
  
 0.501
AFL72430.1
Flagellar protein export ATPase FliI; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI.
  
 
 0.497
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.