AFL73498.1 protein (Thiocystis violascens) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

AFL73498.1

PFAM: Mating pair stabilisation protein TraN. (797 aa)

Predicted Functional Partners:

AFL73499.1

0.955

AFL73503.1

0.952

AFL73501.1

0.951

AFL73584.1

0.795

AFL73500.1

0.794

AFL73456.1

0.792

AFL73516.1

0.792

AFL73586.1

0.792

AFL73457.1

0.791

AFL73585.1

0.791

Your Current Organism:

Thiocystis violascens

NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFL73456.1	AFL73457.1	Thivi_1450	Thivi_1451	TIGRFAM: TraF-like protein.	PFAM: Conjugative relaxosome accessory transposon protein.	0.945
AFL73456.1	AFL73498.1	Thivi_1450	Thivi_1497	TIGRFAM: TraF-like protein.	PFAM: Mating pair stabilisation protein TraN.	0.792
AFL73456.1	AFL73499.1	Thivi_1450	Thivi_1498	TIGRFAM: TraF-like protein.	PFAM: TraU protein.	0.792
AFL73456.1	AFL73501.1	Thivi_1450	Thivi_1500	TIGRFAM: TraF-like protein.	PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.	0.787
AFL73456.1	AFL73503.1	Thivi_1450	Thivi_1502	TIGRFAM: TraF-like protein.	Hypothetical protein; TIGRFAM: type-IV secretion system protein TraC.	0.790
AFL73456.1	AFL73516.1	Thivi_1450	Thivi_1519	TIGRFAM: TraF-like protein.	TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily.	0.788
AFL73456.1	AFL73584.1	Thivi_1450	Thivi_1597	TIGRFAM: TraF-like protein.	PFAM: TraG-like protein, N-terminal region.	0.792
AFL73456.1	AFL73585.1	Thivi_1450	Thivi_1598	TIGRFAM: TraF-like protein.	PFAM: Conjugative relaxosome accessory transposon protein.	0.793
AFL73457.1	AFL73456.1	Thivi_1451	Thivi_1450	PFAM: Conjugative relaxosome accessory transposon protein.	TIGRFAM: TraF-like protein.	0.945
AFL73457.1	AFL73498.1	Thivi_1451	Thivi_1497	PFAM: Conjugative relaxosome accessory transposon protein.	PFAM: Mating pair stabilisation protein TraN.	0.791
AFL73457.1	AFL73499.1	Thivi_1451	Thivi_1498	PFAM: Conjugative relaxosome accessory transposon protein.	PFAM: TraU protein.	0.814
AFL73457.1	AFL73501.1	Thivi_1451	Thivi_1500	PFAM: Conjugative relaxosome accessory transposon protein.	PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.	0.790
AFL73457.1	AFL73503.1	Thivi_1451	Thivi_1502	PFAM: Conjugative relaxosome accessory transposon protein.	Hypothetical protein; TIGRFAM: type-IV secretion system protein TraC.	0.795
AFL73457.1	AFL73516.1	Thivi_1451	Thivi_1519	PFAM: Conjugative relaxosome accessory transposon protein.	TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily.	0.799
AFL73457.1	AFL73584.1	Thivi_1451	Thivi_1597	PFAM: Conjugative relaxosome accessory transposon protein.	PFAM: TraG-like protein, N-terminal region.	0.796
AFL73457.1	AFL73586.1	Thivi_1451	Thivi_1599	PFAM: Conjugative relaxosome accessory transposon protein.	TIGRFAM: TraF-like protein.	0.793
AFL73498.1	AFL73456.1	Thivi_1497	Thivi_1450	PFAM: Mating pair stabilisation protein TraN.	TIGRFAM: TraF-like protein.	0.792
AFL73498.1	AFL73457.1	Thivi_1497	Thivi_1451	PFAM: Mating pair stabilisation protein TraN.	PFAM: Conjugative relaxosome accessory transposon protein.	0.791
AFL73498.1	AFL73499.1	Thivi_1497	Thivi_1498	PFAM: Mating pair stabilisation protein TraN.	PFAM: TraU protein.	0.955
AFL73498.1	AFL73500.1	Thivi_1497	Thivi_1499	PFAM: Mating pair stabilisation protein TraN.	PFAM: Type-F conjugative transfer system pilin assembly protein.	0.794

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Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.719

expected number of edges:

16

PPI enrichment p-value:

0.00125

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006310

DNA recombination

5 of 80

1.51

1.58

0.00021

GO:0015074

DNA integration

3 of 23

1.83

1.18

0.0074

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000150

DNA strand exchange activity

4 of 13

2.2

2.78

9.14e-06

GO:0140097

Catalytic activity, acting on DNA

5 of 129

1.3

1.23

0.00058

GO:0003677

DNA binding

5 of 353

0.87

0.51

0.0357

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7142

DNA strand exchange activity

4 of 11

2.28

3.04

3.50e-06

CL:7422

Mixed, incl. NUDIX hydrolase, and Transposase activity

3 of 7

2.35

2.27

0.00012

CL:7083

Mixed, incl. DNA metabolic process, and Transmembrane

7 of 193

1.27

1.59

3.50e-06

CL:7144

Recombinase zinc beta ribbon domain

2 of 5

2.32

1.38

0.0048

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0018995

Host cellular component

4 of 18

2.06

2.62

1.16e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036162

Resolvase-like, N-terminal catalytic domain superfamily

4 of 13

2.2

2.61

2.02e-05

IPR006119

Resolvase, N-terminal catalytic domain

4 of 13

2.2

2.61

2.02e-05

IPR025827

Recombinase zinc beta ribbon domain

3 of 6

2.41

2.17

0.00020

IPR038109

DNA-binding recombinase domain superfamily

3 of 9

2.24

1.96

0.00039

IPR011109

DNA-binding recombinase domain

3 of 9

2.24

1.96

0.00039

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00857

Resolvase, N terminal domain

3 of 11

2.15

2.07

0.00021

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