STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL73719.1PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase. (526 aa)    
Predicted Functional Partners:
AFL75788.1
PFAM: GtrA-like protein; Glycosyl transferase family 2.
  
 0.946
AFL76378.1
Putative integral membrane protein; PFAM: Uncharacterised protein family (UPF0104).
 
  
 0.646
AFL74778.1
PFAM: General secretion pathway protein M.
  
     0.585
AFL74781.1
TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
     0.570
AFL74058.1
Hypothetical protein.
  
     0.561
AFL73883.1
Hypothetical protein.
  
    0.555
AFL75768.1
PFAM: Cytochrome c bacterial.
 
     0.543
AFL73783.1
PFAM: Outer membrane protein (OmpH-like).
  
     0.539
AFL75740.1
Putative Rossmann fold nucleotide-binding protein; PFAM: Possible lysine decarboxylase.
  
     0.538
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.535
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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