STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL74019.1RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1; PFAM: von Willebrand factor type A domain. (358 aa)    
Predicted Functional Partners:
AFL74021.1
Hypothetical protein.
 
     0.941
AFL74022.1
PFAM: Protein of unknown function DUF58.
 
  
 0.941
AFL74018.1
PFAM: Tetratricopeptide repeat.
     0.906
AFL74017.1
Hypothetical protein.
 
     0.896
AFL74020.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain.
 
    
0.844
AFL72282.1
PFAM: Protein of unknown function DUF58.
 
  
 0.794
AFL74025.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.784
AFL72911.1
Hypothetical protein.
 
   
 0.779
AFL72283.1
Hypothetical protein.
 
     0.768
AFL72280.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.708
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.