STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL74249.1Type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF. (1183 aa)    
Predicted Functional Partners:
AFL74248.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2077); OmpA family; TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein.
 
 
 0.992
AFL74250.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2094); TIGRFAM: type VI secretion-associated protein, BMA_A0400 family.
  
 0.986
AFL74247.1
PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.
 
  
 0.977
AFL74246.1
TIGRFAM: type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.968
AFL74245.1
PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein.
 
  
 0.963
AFL74236.1
PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.945
AFL74244.1
Rhs element Vgr protein; PFAM: Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein.
 
  
 0.934
AFL74237.1
PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.914
AFL74233.1
PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.905
AFL74251.1
PFAM: Protein phosphatase 2C.
 
  
 0.901
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.