STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL74425.1PFAM: Prokaryotic N-terminal methylation motif; Pilin (bacterial filament); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; manually curated; Belongs to the N-Me-Phe pilin family. (164 aa)    
Predicted Functional Partners:
AFL72843.1
PFAM: Prokaryotic N-terminal methylation motif; Pilin (bacterial filament); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; Belongs to the N-Me-Phe pilin family.
 
  
0.923
AFL74768.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
 
   
 0.760
AFL74764.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
   
 0.645
AFL74766.1
PFAM: Pilus assembly protein, PilO.
  
   
 0.599
AFL72310.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
   
 0.536
AFL72309.1
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.534
AFL74765.1
PFAM: Fimbrial assembly protein (PilN).
  
   
 0.497
AFL74089.1
TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain.
  
   
 0.447
AFL74090.1
Tfp pilus assembly protein PilW.
 
   
 0.443
AFL74091.1
Tfp pilus assembly protein PilX.
  
   
 0.420
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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