STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL75377.1Mu-like prophage protein gp16; PFAM: Protein of unknown function (DUF1018). (144 aa)    
Predicted Functional Partners:
AFL76194.1
Hypothetical protein.
 
    0.816
AFL76203.1
PFAM: Protein of unknown function (DUF3164).
 
    0.804
AFL75378.1
Hypothetical protein; PFAM: Mor transcription activator family.
       0.795
AFL75373.1
Integrase family protein; PFAM: Mu DNA-binding domain; Integrase core domain.
 
    0.791
AFL76193.1
Integrase family protein; PFAM: Mu transposase, C-terminal; Integrase core domain; Mu DNA-binding domain.
 
    0.791
AFL76222.1
TIGRFAM: phage uncharacterized protein (putative large terminase), C-terminal domain.
 
    0.791
AFL76223.1
Mu-like prophage protein gp29; PFAM: Protein of unknown function (DUF935).
 
    0.791
AFL75387.1
Mu-like prophage protein gp29; PFAM: Protein of unknown function (DUF935).
 
    0.790
AFL75392.1
Phage head morphogenesis protein, SPP1 gp7; PFAM: Phage Mu protein F like protein.
 
     0.789
AFL76226.1
PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.789
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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