STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL75926.1PFAM: Domain of unknown function DUF29. (158 aa)    
Predicted Functional Partners:
AFL75925.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Domain of unknown function (DUF3427).
       0.773
AFL72126.1
Hypothetical protein.
    
 0.765
rapA
DNA/RNA helicase, superfamily II, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
   
 0.704
AFL72818.1
Ankyrin repeat-containing protein.
    
 0.641
AFL75766.1
Ankyrin repeat-containing protein.
    
 0.641
AFL76279.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat.
    
 0.641
AFL72419.1
Hypothetical protein.
    
 0.564
AFL74097.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
    
 0.564
AFL75291.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
    
 0.564
AFL74027.1
Prolyl aminopeptidase; PFAM: Nucleotidyltransferase domain; TIGRFAM: proline iminopeptidase, Neisseria-type subfamily.
   
  0.541
Your Current Organism:
Thiocystis violascens
NCBI taxonomy Id: 765911
Other names: T. violascens DSM 198, Thiocystis violascens DSM 198, Thiocystis violascens str. DSM 198, Thiocystis violascens strain DSM 198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.