Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGA88958.1PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM. (362 aa)    
Predicted Functional Partners:
AGA88959.1
PFAM: Fimbrial assembly protein (PilN).
 
 
 0.999
AGA88962.1
Type IV pilus secretin PilQ/competence protein; PFAM: Secretin and TonB N terminus short domain; Bacterial type II/III secretion system short domain; Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
 
 
 0.990
AGA88960.1
PFAM: Pilus assembly protein, PilO.
 
 
 0.989
AGA88961.1
PFAM: Pilus assembly protein, PilP.
 
  
 0.968
AGA90045.1
LysM domain-containing protein; PFAM: LysM domain.
  
 
   0.905
AGA89528.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
  
  
 0.894
AGA91844.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.878
AGA89529.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
   
 0.867
AGA91109.1
Tfp pilus assembly protein PilZ; PFAM: PilZ domain.
  
   
 0.865
AGA89854.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
 
 
 0.839
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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