Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA88975.1PFAM: Protein of unknown function (DUF526). (148 aa)    
Predicted Functional Partners:
AGA88976.1
Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein.
       0.830
AGA88933.1
Hypothetical protein; PFAM: SCP-2 sterol transfer family.
  
   
 0.789
AGA90479.1
Hypothetical protein; PFAM: Zinc-finger domain.
  
     0.680
AGA89992.1
PFAM: Uncharacterised protein family (UPF0149); Belongs to the UPF0149 family.
  
    0.673
AGA88977.1
ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter.
       0.671
smg
PFAM: Protein of unknown function (DUF494); Belongs to the Smg family.
  
     0.662
AGA90063.1
PFAM: Uncharacterised protein family (UPF0125); Belongs to the UPF0125 (RnfH) family.
  
     0.561
AGA89359.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.476
AGA89682.1
PFAM: Protein of unknown function (DUF1249).
  
    0.467
AGA91106.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.463
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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