Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA89585.1Hypothetical protein. (643 aa)    
Predicted Functional Partners:
AGA89592.1
PFAM: Protein kinase domain.
 
     0.728
AGA90715.1
PFAM: Protein of unknown function (DUF1631).
  
     0.654
AGA91109.1
Tfp pilus assembly protein PilZ; PFAM: PilZ domain.
  
     0.625
AGA89582.1
Hypothetical protein.
  
     0.616
AGA90510.1
PFAM: Protein of unknown function (DUF1631).
  
     0.603
AGA91372.1
TIGRFAM: FimV C-terminal domain; FimV N-terminal domain.
  
     0.594
AGA89586.1
TIGR00251 family protein; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: TIGR00251 family protein; Belongs to the UPF0235 family.
       0.584
AGA89587.1
Putative integral membrane protein; PFAM: YGGT family.
       0.562
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.562
AGA91845.1
Tfp pilus assembly protein, tip-associated adhesin PilY1; PFAM: Neisseria PilC protein.
  
     0.538
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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