Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA89621.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
AGA89619.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
       0.773
AGA89620.1
Hypothetical protein.
       0.773
AGA89622.1
Hypothetical protein.
       0.773
AGA89623.1
PFAM: ATPase family associated with various cellular activities (AAA).
       0.773
AGA89624.1
Hypothetical protein.
       0.773
AGA89625.1
Hypothetical protein.
       0.773
AGA89618.1
PFAM: Phage tail sheath protein.
       0.757
AGA89626.1
Hypothetical protein.
       0.639
AGA89627.1
Hypothetical protein.
       0.510
AGA89628.1
Hypothetical protein.
       0.510
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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