Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA89629.1Hypothetical protein; PFAM: Phage-related baseplate assembly protein. (173 aa)    
Predicted Functional Partners:
AGA89627.1
Hypothetical protein.
 
    0.953
AGA89628.1
Hypothetical protein.
 
     0.951
AGA89619.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
  
 0.930
AGA89626.1
Hypothetical protein.
 
     0.916
AGA89631.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
 
  
 0.916
AGA89618.1
PFAM: Phage tail sheath protein.
 
   
 0.909
AGA89623.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.901
AGA89632.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
   
 0.898
AGA89633.1
PFAM: Baseplate J-like protein; TIGRFAM: conserved hypothetical protein, phage tail-like region.
 
   
 0.896
AGA89634.1
Hypothetical protein.
 
     0.896
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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