STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA89946.1Hypothetical protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (397 aa)    
Predicted Functional Partners:
AGA89947.1
Hypothetical protein.
 
    0.957
AGA89945.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
     0.849
AGA89948.1
TIGRFAM: putative PEP-CTERM/exosortase system-associated acyltransferase.
 
     0.779
AGA92003.1
PFAM: VacJ like lipoprotein.
    
 
 0.683
AGA90234.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent vitamin B12 receptor.
    
 0.632
AGA91934.1
Hypothetical protein.
 
    0.625
AGA90839.1
PFAM: Voltage gated chloride channel.
  
 
   0.568
AGA90287.1
Hypothetical protein.
  
     0.567
AGA91772.1
TIGRFAM: TIGR03790 family protein.
  
     0.507
AGA90896.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
     0.487
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.