Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA89946.1Hypothetical protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (397 aa)    
Predicted Functional Partners:
AGA89947.1
Hypothetical protein.
 
    0.960
AGA89945.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
     0.852
AGA89948.1
TIGRFAM: putative PEP-CTERM/exosortase system-associated acyltransferase.
 
     0.776
AGA91934.1
Hypothetical protein.
 
    0.627
AGA90287.1
Hypothetical protein.
  
     0.567
AGA90839.1
PFAM: Voltage gated chloride channel.
  
 
   0.552
AGA91772.1
TIGRFAM: TIGR03790 family protein.
  
     0.507
AGA90320.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; FHA domain; ABC-2 type transporter.
  
    0.501
AGA90896.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
     0.487
AGA92141.1
PFAM: Predicted periplasmic lipoprotein (DUF2279).
  
     0.480
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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