STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA90442.1PFAM: Transposase IS116/IS110/IS902 family; Transposase. (412 aa)    
Predicted Functional Partners:
AGA89712.1
Micrococcal nuclease-like nuclease.
  
     0.767
AGA89949.1
Hypothetical protein.
  
     0.715
AGA90398.1
nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family.
  
   
 0.584
AGA92139.1
PFAM: Protein of unknown function (DUF2384).
  
     0.576
AGA92138.1
RES domain-containing protein; PFAM: RES domain.
  
     0.560
AGA90399.1
RecA/RadA recombinase; PFAM: recA bacterial DNA recombination protein.
  
     0.552
AGA91807.1
Acyl dehydratase; PFAM: MaoC like domain.
  
     0.500
AGA91518.1
Decaheme c-type cytochrome, DmsE family; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: decaheme c-type cytochrome, DmsE family; doubled CXXCH domain.
  
     0.490
AGA91197.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.472
AGA91773.1
PDK repeat-containing protein; PFAM: PKD domain; Fibronectin type III domain.
  
     0.434
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.