Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA90760.1Hypothetical protein. (349 aa)    
Predicted Functional Partners:
AGA90759.1
Ni2+-binding GTPase, urease/hydrogenase maturation protein; PFAM: CobW/HypB/UreG, nucleotide-binding domain.
 
   
 0.950
AGA90758.1
ABC-type antimicrobial peptide transport system, ATPase component.
 
   
 0.888
AGA90535.1
ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 0.748
AGA91863.1
ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
   
 0.518
AGA92286.1
Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
  
     0.491
AGA89045.1
Hypothetical protein.
  
     0.442
AGA90874.1
Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase.
  
     0.423
AGA92145.1
PFAM: Protein of unknown function (DUF1318).
  
     0.405
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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