Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA90779.1Hypothetical protein; PFAM: SWIM zinc finger. (279 aa)    
Predicted Functional Partners:
AGA90780.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 Helicase protein; Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
    0.994
AGA90550.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
    0.900
AGA89837.1
PFAM: Domain of unknown function (DUF1814).
  
     0.629
AGA89836.1
Hypothetical protein.
  
     0.613
AGA91903.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2 family N-terminal domain.
    0.558
AGA90316.1
RRM domain-containing RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).
  
     0.541
AGA91585.1
Hypothetical protein; PFAM: Formylglycine-generating sulfatase enzyme.
  
     0.518
AGA91321.1
PFAM: Transposase DDE domain.
  
     0.511
AGA90320.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; FHA domain; ABC-2 type transporter.
  
     0.509
AGA89089.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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