STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA91517.1PFAM: Protein of unknown function (DUF3374). (904 aa)    
Predicted Functional Partners:
AGA91518.1
Decaheme c-type cytochrome, DmsE family; PFAM: Doubled CXXCH motif (Paired_CXXCH_1); TIGRFAM: decaheme c-type cytochrome, DmsE family; doubled CXXCH domain.
  
 
 0.858
AGA89567.1
PFAM: Outer membrane protein (OmpH-like); Belongs to the skp family.
    
 
 0.716
AGA90727.1
PFAM: Outer membrane protein (OmpH-like).
    
 
 0.716
AGA92125.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit.
   
    0.579
AGA91516.1
PFAM: Cytochrome c.
       0.509
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.470
AGA89729.1
Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain.
   
    0.459
AGA90791.1
PFAM: Rhodopirellula transposase.
   
    0.459
AGA92140.1
Putative transcriptional regulator with HTH domain; PFAM: Cache domain; Divergent AAA domain.
   
    0.459
AGA91515.1
PFAM: Cytochrome c.
       0.455
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.