STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA91885.1Hydrogenase 4 membrane component (E). (237 aa)    
Predicted Functional Partners:
AGA91887.1
Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
 
  
 0.998
AGA91888.1
Ni,Fe-hydrogenase III small subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
  
 0.974
AGA91884.1
Formate hydrogenlyase subunit 4; PFAM: NADH dehydrogenase.
 
  
 0.969
AGA91886.1
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
  
 0.967
AGA91883.1
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
  
 0.965
AGA91882.1
Putative transcriptional regulator with C-terminal CBS domains; PFAM: Helix-turn-helix.
 
     0.867
AGA91889.1
Hypothetical protein; PFAM: Uncharacterized ACR, COG1430.
       0.721
AGA91880.1
PFAM: Cell Wall Hydrolase.
       0.651
AGA91881.1
Micrococcal nuclease-like nuclease; PFAM: Staphylococcal nuclease homologue.
       0.651
AGA92027.1
Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase.
  
  
 0.649
Your Current Organism:
Thioflavicoccus mobilis
NCBI taxonomy Id: 765912
Other names: T. mobilis 8321, Thioflavicoccus mobilis 8321, Thioflavicoccus mobilis ATCC 700959, Thioflavicoccus mobilis str. 8321, Thioflavicoccus mobilis strain 8321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.