STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV33647.1KEGG: amr:AM1_4791 WGR domain-containing protein; PFAM: WGR; SMART: WGR. (474 aa)    
Predicted Functional Partners:
EGV33024.1
PFAM: Patatin; Surface antigen variable number; KEGG: mms:mma_2403 patatin-like phospholipase.
  
 
 0.952
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.950
EGV28093.1
PFAM: NlpBDapX lipoprotein; KEGG: alv:Alvin_2410 putative lipoprotein.
   
 
 0.940
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.933
bamE
SmpA/OmlA domain-containing protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.875
EGV31023.1
Phospholipase A(1); Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
    
   0.832
surA
Chaperone surA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
   
 
 0.770
EGV32409.1
PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: alv:Alvin_1428 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.770
EGV30644.1
PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: alv:Alvin_1336 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.770
EGV27905.1
KEGG: alv:Alvin_1496 nitrogen fixation protein NifM; TIGRFAM: Nitrogen fixation protein NifM; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type.
   
 
 0.770
Your Current Organism:
Thiorhodococcus drewsii
NCBI taxonomy Id: 765913
Other names: T. drewsii AZ1, Thiorhodococcus drewsii AZ1, Thiorhodococcus drewsii DSM 15006, Thiorhodococcus drewsii str. AZ1, Thiorhodococcus drewsii strain AZ1
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