STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV33095.1PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: alv:Alvin_1845 putative phage repressor; Belongs to the peptidase S24 family. (117 aa)    
Predicted Functional Partners:
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.988
EGV29641.1
KEGG: llo:LLO_1986 DNA polymerase V, subunit C.
  
 
 0.949
EGV31417.1
CRISPR-associated protein, Cas6-related; KEGG: alv:Alvin_1248 CRISPR-associated Cas6-like protein; TIGRFAM: CRISPR-associated protein, Cas6-related; PFAM: CRISPR-associated protein, Cas6-related.
  
     0.771
EGV33762.1
PFAM: ATPase, V0/A0 complex, subunit C/D; KEGG: alv:Alvin_1356 H+transporting two-sector ATPase C (AC39) subunit.
 
     0.758
EGV30980.1
KEGG: alv:Alvin_2320 taurine catabolism dioxygenase.
  
     0.746
EGV31403.1
PFAM: Polysulphide reductase, NrfD; KEGG: alv:Alvin_1262 DsrP protein.
  
   
 0.739
EGV31977.1
KEGG: alv:Alvin_1454 hypothetical protein.
  
     0.732
EGV27883.1
YebG family protein; PFAM: YebG; KEGG: alv:Alvin_0989 YebG family protein.
   
  
 0.726
EGV31405.1
DsrJ protein; KEGG: alv:Alvin_1260 DsrJ protein.
  
     0.725
EGV28228.1
KEGG: alv:Alvin_1057 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like.
 
     0.725
Your Current Organism:
Thiorhodococcus drewsii
NCBI taxonomy Id: 765913
Other names: T. drewsii AZ1, Thiorhodococcus drewsii AZ1, Thiorhodococcus drewsii DSM 15006, Thiorhodococcus drewsii str. AZ1, Thiorhodococcus drewsii strain AZ1
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