STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV30125.1PFAM: Peptidase U32; KEGG: alv:Alvin_0364 peptidase U32. (434 aa)    
Predicted Functional Partners:
EGV32181.1
PFAM: Peptidase U32; KEGG: alv:Alvin_1066 peptidase U32.
 
 
 0.916
EGV30126.1
KEGG: alv:Alvin_2486 hypothetical protein; PFAM: Protein of unknown function DUF399; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF.
       0.785
EGV29709.1
Sterol-binding domain protein; PFAM: Sterol-binding; KEGG: alv:Alvin_1393 sterol-binding domain-containing protein.
 
  
 0.727
EGV32402.1
TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: alv:Alvin_1422 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.658
EGV27858.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cti:RALTA_B1925 putative methyltransferase.
  
  
 0.583
EGV27801.1
KEGG: rce:RC1_1081 O-methyltransferase, putative; PFAM: O-methyltransferase, family 3.
  
  
 0.563
EGV30127.1
Peptidase M28; KEGG: alv:Alvin_2487 peptidase M28.
       0.548
EGV31215.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.504
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
    0.501
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.497
Your Current Organism:
Thiorhodococcus drewsii
NCBI taxonomy Id: 765913
Other names: T. drewsii AZ1, Thiorhodococcus drewsii AZ1, Thiorhodococcus drewsii DSM 15006, Thiorhodococcus drewsii str. AZ1, Thiorhodococcus drewsii strain AZ1
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