STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGV29896.1Choline dehydrogenase; KEGG: scl:sce5632 hypothetical protein; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; Glucose-methanol-choline oxidoreductase, C-terminal. (622 aa)    
Predicted Functional Partners:
EGV30599.1
Ankyrin; KEGG: alv:Alvin_0962 ankyrin; PFAM: Ankyrin repeat; SMART: Ankyrin repeat.
    
 0.966
EGV28233.1
SMART: Ankyrin repeat; KEGG: alv:Alvin_1471 ankyrin.
    
 0.966
EGV28036.1
KEGG: fal:FRAAL5563 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; Pentapeptide repeat; Nucleoside phosphorylase; SMART: WD40 repeat.
  
 
 0.954
EGV32669.1
WD40 repeat-containing protein; PFAM: WD40 repeat, subgroup; KEGG: app:CAP2UW1_2609 WD-40 repeat protein.
  
 
 0.952
EGV33980.1
WD40 repeat-containing protein; PFAM: WD40 repeat, subgroup; KEGG: gob:Gobs_3451 WD40 repeat, subgroup.
    
 0.946
EGV30487.1
KEGG: alv:Alvin_2950 hypothetical protein.
    
 0.946
EGV27679.1
KEGG: amr:AM1_4989 WD repeat-containing protein.
    
 0.946
EGV29895.1
KEGG: nmu:Nmul_A0526 hypothetical protein.
   
 
 0.918
EGV31340.1
PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; KEGG: alv:Alvin_1172 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
  0.908
EGV29515.1
SEFIR domain protein; PFAM: SEFIR; Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: app:CAP2UW1_1196 tetratricopeptide TPR_2 repeat protein.
  
 
 0.890
Your Current Organism:
Thiorhodococcus drewsii
NCBI taxonomy Id: 765913
Other names: T. drewsii AZ1, Thiorhodococcus drewsii AZ1, Thiorhodococcus drewsii DSM 15006, Thiorhodococcus drewsii str. AZ1, Thiorhodococcus drewsii strain AZ1
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