STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ49448.1Ricin B lectin; KEGG: cai:Caci_6878 glycoside hydrolase family 3 domain protein; PFAM: Ricin B lectin; SMART: Ricin B lectin. (164 aa)    
Predicted Functional Partners:
EGZ49848.1
KEGG: tgr:Tgr7_1406 hypothetical protein.
  
  
 0.790
EGZ43746.1
KEGG: tbd:Tbd_1767 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type.
  
 
 0.708
menC
Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
   
 
 0.595
fbp
HAMAP: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; KEGG: tgr:Tgr7_0281 inositol phosphatase/fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; Belongs to the FBPase class 1 family.
   
 
  0.591
EGZ44004.1
KEGG: tgr:Tgr7_3057 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.548
EGZ50723.1
PFAM: Methyltransferase regulatory domain, predicted; KEGG: sit:TM1040_3839 methyltransferase type 11.
     
 0.513
EGZ50623.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: rpb:RPB_4013 alpha/beta hydrolase.
   
 0.503
menH
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
   
 0.503
EGZ46109.1
bioH protein; TIGRFAM: Carboxylesterase BioH; KEGG: xfn:XfasM23_0627 BioH protein; PFAM: Alpha/beta hydrolase fold-1.
   
 0.503
EGZ44242.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
    0.503
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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