STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ48729.1KEGG: sfu:Sfum_1124 hypothetical protein. (113 aa)    
Predicted Functional Partners:
EGZ47873.1
PFAM: Cell divisionFtsK/SpoIIIE; KEGG: nhl:Nhal_3420 cell division FtsK/SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.918
EGZ44067.1
PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: gpb:HDN1F_25980 addiction module killer protein.
    
 
 0.910
EGZ44037.1
KEGG: dat:HRM2_29940 hypothetical protein.
    
 0.881
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.855
EGZ44298.1
KEGG: tgr:Tgr7_1249 Tfp pilus assembly protein FimV-like protein; TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; PFAM: Peptidoglycan-binding lysin domain.
    
 
 0.809
EGZ46657.1
Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: tgr:Tgr7_3288 carboxyl-terminal protease; SMART: Peptidase S41; PDZ/DHR/GLGF; Belongs to the peptidase S41A family.
  
   0.801
EGZ48730.1
Hypothetical protein.
       0.773
EGZ48342.1
Lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; KEGG: aeh:Mlg_0488 GDSL family lipase.
    
  0.742
EGZ47722.1
KEGG: tgr:Tgr7_1083 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
    
 0.742
EGZ43426.1
Arylesterase; KEGG: tgr:Tgr7_2116 arylesterase; PFAM: Lipase, GDSL.
    
  0.742
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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