STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ48345.1KEGG: slo:Shew_0429 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001. (223 aa)    
Predicted Functional Partners:
EGZ48346.1
KEGG: tgr:Tgr7_3119 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
       0.639
EGZ44014.1
KEGG: tgr:Tgr7_1238 hypothetical protein.
  
     0.594
EGZ46539.1
TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; KEGG: tgr:Tgr7_3261 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS.
  
    0.470
EGZ48347.1
KEGG: tgr:Tgr7_3120 ammonium transporter; TIGRFAM: Ammonium transporter, marine subtype; Ammonium transporter; PFAM: Ammonium transporter.
  
    0.458
EGZ48852.1
PFAM: Major facilitator superfamily MFS-1; KEGG: tgr:Tgr7_1243 major facilitator superfamily MFS_1.
  
     0.409
EGZ45054.1
SapC family protein; PFAM: SapC; KEGG: ajs:Ajs_0580 SapC family protein.
  
     0.406
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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