STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ47844.1TIGRFAM: Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: Cobalamin (vitamin B12)-binding; Radical SAM; KEGG: rca:Rcas_1584 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; SMART: Elongator protein 3/MiaB/NifB. (584 aa)    
Predicted Functional Partners:
EGZ41539.1
KEGG: alv:Alvin_2632 bacteriochlorophyll 4-vinyl reductase; TIGRFAM: Bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR.
 
 
 0.997
EGZ49419.1
KEGG: alv:Alvin_2643 2-vinyl bacteriochlorophyllide hydratase; TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; PFAM: 2-vinyl bacteriochlorophyllide hydratase.
 
 
 0.916
EGZ49414.1
TIGRFAM: Magnesium protoporphyrin O-methyltransferase; KEGG: rru:Rru_A0619 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase, C-terminal.
 
 
 0.896
EGZ50812.1
TIGRFAM: Bacteriochlorophyll/chlorophyll synthetase; KEGG: rce:RC1_2078 bacteriochlorophyll/chlorophyll a synthase; PFAM: UbiA prenyltransferase.
 
 
 0.885
EGZ43476.1
PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; KEGG: rce:RC1_0144 coenzyme F420 hydrogenase.
  
  
  0.856
EGZ49865.1
polyphosphate:AMP phosphotransferase; KEGG: tgr:Tgr7_0486 protein of unknown function DUF344; TIGRFAM: Polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase-2-related.
   
    0.835
EGZ44704.1
PFAM: Alpha/beta hydrolase fold-1; KEGG: rpd:RPD_3774 hypothetical protein.
  
     0.722
EGZ46236.1
KEGG: rce:RC1_2096 chlorophyllide reductase subunit Z; TIGRFAM: Chlorophyllide reductase subunit Z; PFAM: Nitrogenase/oxidoreductase, component 1.
  
  
 0.707
EGZ50810.1
KEGG: alv:Alvin_2646 geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase; Geranylgeranyl reductase, plant/prokaryotic; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like.
 
  
 0.690
EGZ46237.1
TIGRFAM: Chlorophyllide reductase subunit Y; KEGG: rce:RC1_2095 chlorophyllide reductase subunit Y.
  
  
 0.685
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.