STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ45993.1PFAM: Phosphoribosyltransferase; KEGG: tgr:Tgr7_0129 competence protein F. (184 aa)    
Predicted Functional Partners:
EGZ50727.1
KEGG: tgr:Tgr7_1218 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.950
EGZ49435.1
TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: tgr:Tgr7_1368 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like.
 
  
 0.942
EGZ48178.1
KEGG: nhl:Nhal_3814 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A.
 
 
 0.931
EGZ49872.1
UPF0758 protein yicR; TIGRFAM: Uncharacterised protein family UPF0758; HAMAP: Uncharacterised protein family UPF0758, YicR subfamily; KEGG: tgr:Tgr7_0100 DNA repair protein RadC; PFAM: Uncharacterised protein family UPF0758; Belongs to the UPF0758 family.
 
    0.913
EGZ42749.1
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; Extracellular solute-binding protein, family 3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: alv:Alvin_1490 multi-sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Extracellular solute-bindi [...]
  
  
 0.880
EGZ47553.1
Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: tkm:TK90_0150 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core.
 
  
 0.875
EGZ44463.1
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; Diguanylate cyclase, predicted; KEGG: pca:Pcar_1055 two component signal transduction response regulator; SMART: Diguanylate phosphodiesterase, EAL domain; Signal transduction response regulator, receiver domain; Diguanylate cyclase, predicted.
  
  
 0.839
EGZ48863.1
KEGG: tgr:Tgr7_1540 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
   
  
 0.838
EGZ43086.1
KEGG: eba:p1B308 hypothetical protein.
   
    0.829
EGZ47179.1
UPF0102 protein yraN; TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: alv:Alvin_0122 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
 
    0.813
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.