STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ44018.1KEGG: tgr:Tgr7_3226 Tfp pilus assembly protein PilX. (178 aa)    
Predicted Functional Partners:
EGZ44019.1
Neisseria PilC domain protein; KEGG: tgr:Tgr7_3225 putative type 4 fimbrial biogenesis protein PilY1; PFAM: PilC domain; Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
 
  
 0.987
EGZ44017.1
KEGG: noc:Noc_2272 type IV pilus assembly protein PilW.
 
  
 0.983
EGZ44016.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV.
 
  
 0.967
EGZ44015.1
Hypothetical protein; KEGG: net:Neut_1837 fimbrial pilin related signal peptide protein.
 
  
 0.941
EGZ44228.1
KEGG: hna:Hneap_0017 hypothetical protein.
 
  
 0.929
EGZ44227.1
TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: shm:Shewmr7_3168 type IV pilus modification protein PilV.
 
  
 0.889
EGZ48854.1
KEGG: tkm:TK90_0219 putative type IV pilin.
 
  
 0.862
EGZ48714.1
Hypothetical protein; KEGG: tgr:Tgr7_3230 fimbrial pilin related signal peptide protein.
 
  
 0.856
EGZ44226.1
KEGG: aha:AHA_0686 putative type IV pilin.
 
  
 0.856
EGZ44225.1
KEGG: dac:Daci_5198 fimbrial protein pilin.
 
  
 0.823
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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