STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGZ42008.1KEGG: gpb:HDN1F_13470 hypothetical protein. (816 aa)    
Predicted Functional Partners:
htpX
Protease htpX; KEGG: tgr:Tgr7_2118 heat shock protein HtpX; HAMAP: Peptidase M48, protease HtpX, putative; PFAM: Peptidase M48; Belongs to the peptidase M48B family.
     
 0.875
EGZ45785.1
TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: tgr:Tgr7_0254 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal.
    
  0.844
EGZ42007.1
KEGG: dze:Dd1591_3683 hypothetical protein.
  
  
 0.830
EGZ42006.1
PFAM: Patatin/Phospholipase A2-related; KEGG: gpb:HDN1F_13450 hypothetical protein.
   
   0.798
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.766
EGZ48467.1
KEGG: hha:Hhal_0588 redox-active disulfide protein 2.
    
 0.742
EGZ47993.1
KEGG: mca:MCA0417 thiol:disulfide interchange protein DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin.
    
 0.742
EGZ46762.1
PFAM: Protein of unknown function DUF1566; KEGG: tgr:Tgr7_2546 hypothetical protein.
   
 0.739
EGZ44466.1
PFAM: Protein of unknown function DUF1566; KEGG: tgr:Tgr7_2546 hypothetical protein.
   
 0.739
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.707
Your Current Organism:
Thiorhodospira sibirica
NCBI taxonomy Id: 765914
Other names: T. sibirica ATCC 700588, Thiorhodospira sibirica A12, Thiorhodospira sibirica ATCC 700588, Thiorhodospira sibirica str. ATCC 700588, Thiorhodospira sibirica strain ATCC 700588
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