Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFW13351.1 | SFW13367.1 | SAMN05660313_00010 | SAMN05660313_00011 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.858 |
| SFW13351.1 | xerC | SAMN05660313_00010 | SAMN05660313_00012 | Hypothetical protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.581 |
| SFW13367.1 | SFW13351.1 | SAMN05660313_00011 | SAMN05660313_00010 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.858 |
| SFW13367.1 | xerC | SAMN05660313_00011 | SAMN05660313_00012 | RNA polymerase sigma-70 factor, ECF subfamily. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.581 |
| SFW13391.1 | xerC | SAMN05660313_00013 | SAMN05660313_00012 | Hypothetical protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.459 |
| SFW23428.1 | SFW27869.1 | SAMN05660313_00665 | SAMN05660313_01023 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Chromosome partitioning protein. | 0.630 |
| SFW23428.1 | SFW27884.1 | SAMN05660313_00665 | SAMN05660313_01024 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.794 |
| SFW23428.1 | xerC | SAMN05660313_00665 | SAMN05660313_00012 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.620 |
| SFW27869.1 | SFW23428.1 | SAMN05660313_01023 | SAMN05660313_00665 | Chromosome partitioning protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.630 |
| SFW27869.1 | SFW27884.1 | SAMN05660313_01023 | SAMN05660313_01024 | Chromosome partitioning protein. | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | 0.997 |
| SFW27869.1 | xerC | SAMN05660313_01023 | SAMN05660313_00012 | Chromosome partitioning protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.557 |
| SFW27884.1 | SFW23428.1 | SAMN05660313_01024 | SAMN05660313_00665 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.794 |
| SFW27884.1 | SFW27869.1 | SAMN05660313_01024 | SAMN05660313_01023 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Chromosome partitioning protein. | 0.997 |
| SFW27884.1 | xerC | SAMN05660313_01024 | SAMN05660313_00012 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.596 |
| SFW44171.1 | SFW53448.1 | SAMN05660313_01703 | SAMN05660313_02211 | Prephenate dehydrogenase. | comF family protein. | 0.633 |
| SFW44171.1 | apt | SAMN05660313_01703 | SAMN05660313_01248 | Prephenate dehydrogenase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.600 |
| SFW44171.1 | xerC | SAMN05660313_01703 | SAMN05660313_00012 | Prephenate dehydrogenase. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.418 |
| SFW53448.1 | SFW44171.1 | SAMN05660313_02211 | SAMN05660313_01703 | comF family protein. | Prephenate dehydrogenase. | 0.633 |
| SFW53448.1 | apt | SAMN05660313_02211 | SAMN05660313_01248 | comF family protein. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.615 |
| SFW53448.1 | xerC | SAMN05660313_02211 | SAMN05660313_00012 | comF family protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.445 |
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