STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW42091.1DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family. (167 aa)    
Predicted Functional Partners:
SFW42076.1
Hypothetical protein.
 
     0.802
SFW42152.1
Hypothetical protein.
 
     0.786
SFW42114.1
Uncharacterized conserved protein (COG2071).
       0.775
SFW42103.1
DoxX-like family protein.
       0.773
SFW42128.1
Methyltransferase domain-containing protein.
       0.773
SFW42140.1
Hypothetical protein.
       0.714
SFW55442.1
RNA-splicing ligase RtcB, repairs tRNA damage.
  
     0.617
SFW55455.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.523
SFW39227.1
Uncharacterized membrane protein.
  
     0.481
SFW42065.1
Hypothetical protein.
       0.434
Your Current Organism:
Cellulophaga fucicola
NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.