STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW45597.1Tetratricopeptide repeat-containing protein. (721 aa)    
Predicted Functional Partners:
SFW45587.1
Two component transcriptional regulator, LytTR family.
 
   0.937
SFW15043.1
Two component transcriptional regulator, LytTR family.
  
  0.855
SFW55850.1
Two component transcriptional regulator, LytTR family.
  
  0.843
SFW57460.1
Two component transcriptional regulator, LytTR family.
  
  0.836
SFW45608.1
Von Willebrand factor type A domain-containing protein.
 
     0.812
SFW65321.1
Response regulator receiver domain-containing protein.
  
  0.811
SFW54646.1
Two component transcriptional regulator, LytTR family.
  
  0.801
SFW68761.1
Two component transcriptional regulator, LytTR family.
 
   0.776
SFW24367.1
Two component transcriptional regulator, LytTR family.
 
   0.774
SFW20220.1
Two component transcriptional regulator, LytTR family.
  
  0.766
Your Current Organism:
Cellulophaga fucicola
NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.