STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW55176.1TonB-linked outer membrane protein, SusC/RagA family. (1008 aa)    
Predicted Functional Partners:
SFW55188.1
Starch-binding associating with outer membrane.
 
     0.946
SFW55222.1
Hypothetical protein.
 
     0.898
SFW55211.1
Hypothetical protein.
 
     0.897
SFW55163.1
Y_Y_Y domain-containing protein.
 
     0.841
SFW55197.1
Concanavalin A-like lectin/glucanases superfamily protein.
       0.746
SFW49317.1
TonB-dependent Receptor Plug Domain.
 
   0.710
SFW55245.1
Alpha/beta hydrolase family protein.
 
     0.639
SFW55234.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
     0.601
SFW30124.1
Starch-binding associating with outer membrane.
 
     0.589
SFW36874.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.568
Your Current Organism:
Cellulophaga fucicola
NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.