SFW66005.1 protein (Cellulophaga fucicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFW66005.1

Ribosome-associated heat shock protein Hsp15. (126 aa)

Predicted Functional Partners:

rplS

0.908

rplQ

0.884

rpmB

0.883

rplN

0.879

rpmH

0.877

rplM

0.877

rplV

0.876

rplT

0.871

rplD

0.871

rpmI

0.870

Your Current Organism:

Cellulophaga fucicola

NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFW66005.1	rplD	SAMN05660313_03203	SAMN05660313_01528	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.871
SFW66005.1	rplM	SAMN05660313_03203	SAMN05660313_01860	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.877
SFW66005.1	rplN	SAMN05660313_03203	SAMN05660313_01519	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.879
SFW66005.1	rplQ	SAMN05660313_03203	SAMN05660313_01503	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L17.	0.884
SFW66005.1	rplS	SAMN05660313_03203	SAMN05660313_00977	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.908
SFW66005.1	rplT	SAMN05660313_03203	SAMN05660313_01237	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.871
SFW66005.1	rplV	SAMN05660313_03203	SAMN05660313_01524	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.876
SFW66005.1	rpmB	SAMN05660313_03203	SAMN05660313_03291	Ribosome-associated heat shock protein Hsp15.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.883
SFW66005.1	rpmH	SAMN05660313_03203	SAMN05660313_00045	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.877
SFW66005.1	rpmI	SAMN05660313_03203	SAMN05660313_01236	Ribosome-associated heat shock protein Hsp15.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.870
rplD	SFW66005.1	SAMN05660313_01528	SAMN05660313_03203	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosome-associated heat shock protein Hsp15.	0.871
rplD	rplM	SAMN05660313_01528	SAMN05660313_01860	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplD	rplN	SAMN05660313_01528	SAMN05660313_01519	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplD	rplQ	SAMN05660313_01528	SAMN05660313_01503	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L17.	0.999
rplD	rplS	SAMN05660313_01528	SAMN05660313_00977	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rplD	rplT	SAMN05660313_01528	SAMN05660313_01237	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplD	rplV	SAMN05660313_01528	SAMN05660313_01524	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplD	rpmB	SAMN05660313_01528	SAMN05660313_03291	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplD	rpmH	SAMN05660313_01528	SAMN05660313_00045	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.998
rplD	rpmI	SAMN05660313_01528	SAMN05660313_01236	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.999