STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW67489.1Isopentenyl-diphosphate delta-isomerase. (175 aa)    
Predicted Functional Partners:
SFW63058.1
Diphosphomevalonate decarboxylase.
 
 
 0.982
SFW48327.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
 
 0.944
SFW65274.1
Isopentenyldiphosphate isomerase.
  
  
 
0.873
SFW67482.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
       0.813
SFW67475.1
Mannose-6-phosphate isomerase.
       0.733
SFW67018.1
Phytoene/squalene synthetase.
 
 
 0.638
SFW67469.1
Hypothetical protein.
       0.566
SFW67497.1
Type IX secretion system membrane protein, PorP/SprF family.
       0.517
SFW67504.1
Gliding motility-associated C-terminal domain-containing protein.
       0.504
SFW15752.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  
 0.450
Your Current Organism:
Cellulophaga fucicola
NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860
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