STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW69235.1Alginate lyase. (299 aa)    
Predicted Functional Partners:
SFW69218.1
Starch-binding associating with outer membrane.
 
 
   0.945
SFW69208.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.907
SFW69246.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
     0.846
SFW69199.1
Alginate lyase.
 
  
  0.773
SFW69228.1
PKD domain-containing protein.
       0.759
SFW15351.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.757
SFW69265.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.739
SFW60175.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
     0.691
SFW69256.1
MFS transporter, ACS family, hexuronate transporter.
 
     0.683
SFW23813.1
Alginate lyase.
  
 
   0.644
Your Current Organism:
Cellulophaga fucicola
NCBI taxonomy Id: 76595
Other names: ATCC 700863, C. fucicola, CIP 106308, DSM 24786, JCM 21778, LMG 18536, LMG:18536, strain NN015860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.