Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sctJ-AType III secretion periplasmic lipoprotein. (321 aa)    
Predicted Functional Partners:
sctR,
Type III secretion integral inner membrane protein.
 
 
 0.971
sctS,
Type III secretion integral inner membrane protein.
 
 
 0.965
sctT,
Type III secretion integral inner membrane protein.
 
 
 0.965
sctL,
Type III secretion ATPase inhibitor.
 
  
 0.962
sctV,
Type III secretion integral inner membrane protein.
 
 
 0.958
sctD,
Type III secretion integral inner membrane ring protein.
 
  
 0.905
sctJ-B
Type III secretion periplasmic lipoprotein.
  
  
 
0.904
sctQ,
Type III secretion basal body protein.
 
  
 0.854
sctN,
Type III secretion ATPase.
 
  
 0.843
PUV_25670
Putative uncharacterized protein; Belongs to the bacterial secretin family.
 
 
 0.821
Your Current Organism:
Parachlamydia acanthamoebae
NCBI taxonomy Id: 765952
Other names: P. acanthamoebae UV-7, Parachlamydia acanthamoebae UV-7, Parachlamydia acanthamoebae str. UV-7, Parachlamydia acanthamoebae strain UV-7, Parachlamydia sp. UV-7
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