Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbCUncharacterized protein ybbC. (416 aa)    
Predicted Functional Partners:
PUV_01500
Putative uncharacterized protein.
       0.773
ybbD
Uncharacterized lipoprotein ybbD.
 
    0.684
PUV_01510
Hypothetical protein, putative type III secreted.
       0.655
PUV_01520
UPF0158 protein CPn_0518/CP_0235/CPj0518/CpB0539.
       0.613
PUV_01530
Unknown protein.
       0.613
PUV_01540
Putative uncharacterized protein.
       0.462
ampC-B
Beta-lactamase.
 
    0.457
ampC-A
Beta-lactamase.
 
    0.424
PUV_10810
Putative uncharacterized protein.
 
    0.401
Your Current Organism:
Parachlamydia acanthamoebae
NCBI taxonomy Id: 765952
Other names: P. acanthamoebae UV-7, Parachlamydia acanthamoebae UV-7, Parachlamydia acanthamoebae str. UV-7, Parachlamydia acanthamoebae strain UV-7, Parachlamydia sp. UV-7
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