Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUV_04580Putative uncharacterized protein. (594 aa)    
Predicted Functional Partners:
PUV_19690
Putative uncharacterized protein.
  
     0.722
PUV_24490
Putative uncharacterized protein.
  
     0.663
PUV_17220
Putative uncharacterized protein.
  
     0.652
PUV_21810
Putative uncharacterized protein.
  
     0.651
PUV_00330
Putative uncharacterized protein.
  
     0.604
PUV_15690
Putative uncharacterized protein.
  
     0.536
PUV_11840
Putative uncharacterized protein.
  
     0.528
TrkA1
Trk system potassium uptake protein TrkA homolog 1.
       0.526
TrkG
Trk system potassium uptake protein TrkG.
       0.526
prmA
Ribosomal protein L11 methyltransferase.
       0.526
Your Current Organism:
Parachlamydia acanthamoebae
NCBI taxonomy Id: 765952
Other names: P. acanthamoebae UV-7, Parachlamydia acanthamoebae UV-7, Parachlamydia acanthamoebae str. UV-7, Parachlamydia acanthamoebae strain UV-7, Parachlamydia sp. UV-7
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