Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUV_05720Putative uncharacterized protein. (328 aa)    
Predicted Functional Partners:
PUV_05740
Putative uncharacterized protein.
 
     0.948
sctC-B
Type III secretion outer membrane ring component.
 
    0.881
sctC-A
Type III secretion outer membrane ring component.
 
    0.879
PUV_01190
Putative uncharacterized protein.
  
     0.768
PUV_02230
Putative uncharacterized protein.
 
     0.767
PUV_08190
Putative uncharacterized protein.
  
 
   0.767
PUV_09920
Skp-like protein.
  
 
   0.763
PUV_00220
Putative uncharacterized protein.
 
     0.761
wza
Putative polysaccharide export protein wza.
  
 
   0.756
PUV_19250
Putative uncharacterized protein.
  
     0.755
Your Current Organism:
Parachlamydia acanthamoebae
NCBI taxonomy Id: 765952
Other names: P. acanthamoebae UV-7, Parachlamydia acanthamoebae UV-7, Parachlamydia acanthamoebae str. UV-7, Parachlamydia acanthamoebae strain UV-7, Parachlamydia sp. UV-7
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