Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
sctW,Negative regulator of type III secretion. (396 aa)    
Predicted Functional Partners:
scc3-A
Type III secretion specific chlamydia chaperone 3.
  
 
 
 0.909
scc1
Type III secretion specific chlamydia chaperone 1.
   
 
 0.896
PUV_06880
Putative uncharacterized protein.
  
     0.765
PUV_19690
Putative uncharacterized protein.
  
     0.762
PUV_25400
Putative uncharacterized protein.
  
     0.759
sctU,
Type III secretion integral inner membrane protein.
     
 0.756
PUV_23320
Uncharacterized protein TC_0583.
  
     0.723
PUV_09730
Putative uncharacterized protein.
  
     0.718
PUV_16510
Putative uncharacterized protein.
  
     0.716
sctV,
Type III secretion integral inner membrane protein.
     
 0.711
Your Current Organism:
Parachlamydia acanthamoebae
NCBI taxonomy Id: 765952
Other names: P. acanthamoebae UV-7, Parachlamydia acanthamoebae UV-7, Parachlamydia acanthamoebae str. UV-7, Parachlamydia acanthamoebae strain UV-7, Parachlamydia sp. UV-7
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