A0A150UR04 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A150UR04

Thioredoxin domain-containing protein. (182 aa)

Predicted Functional Partners:

A0A150VBW2

0.980

A0A150UTJ6

0.887

A0A150V1F1

0.887

A0A150V426

0.866

A0A150V373

0.858

A0A150VGS4

0.858

A0A150VGV2

0.851

A0A150VIA9

0.849

A0A150V8L0

0.845

A0A150VGJ9

0.845

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A150UR04	A0A150UTJ6	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.887
A0A150UR04	A0A150V1F1	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.887
A0A150UR04	A0A150V373	Thioredoxin domain-containing protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.858
A0A150UR04	A0A150V426	Thioredoxin domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.866
A0A150UR04	A0A150V8L0	Thioredoxin domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.845
A0A150UR04	A0A150VBW2	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.980
A0A150UR04	A0A150VGJ9	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.845
A0A150UR04	A0A150VGS4	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.858
A0A150UR04	A0A150VGV2	Thioredoxin domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.851
A0A150UR04	A0A150VIA9	Thioredoxin domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.849
A0A150UTJ6	A0A150UR04	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.887
A0A150UTJ6	A0A150V373	Thioredoxin domain-containing protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.872
A0A150UTJ6	A0A150V426	Thioredoxin domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.421
A0A150UTJ6	A0A150V8L0	Thioredoxin domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.858
A0A150UTJ6	A0A150VBW2	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.633
A0A150UTJ6	A0A150VGJ9	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.858
A0A150UTJ6	A0A150VGS4	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.872
A0A150UTJ6	A0A150VGV2	Thioredoxin domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.434
A0A150UTJ6	A0A150VIA9	Thioredoxin domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.818
A0A150V1F1	A0A150UR04	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.887